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Partek star aligner v2.5.3a
Star Aligner V2.5.3a, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/star+aligner+v2%2E5%2E3a/star+aligner+v2+5+3a/pmc11666053-60-16-24
Average 90 stars, based on 1 article reviews
star aligner v2.5.3a - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Impact of the elderly lung mucosa on Mycobacterium tuberculosis transcriptional adaptation during infection of alveolar epithelial cells.
Article Snippet: After RNA sequencing, resulting reads were trimmed and aligned to the M.tb H37Rv reference genome (Genbank NC_000962.3) (83–85) with the STAR aligner v2.5.3a in the Partek Flow Genomic Analysis software (v9.0.20.0202, Partek Inc., Chesterfield, MO, USA), using default settings.

Article Title: Impact of the elderly lung mucosa on Mycobacterium tuberculosis transcriptional adaptation during infection of alveolar epithelial cells
Article Snippet: After RNA sequencing, resulting reads were trimmed and aligned to the M.tb H 37 R v reference genome (Genbank NC_000962.3) ( ) with the STAR aligner v2.5.3a in the Partek Flow Genomic Analysis software (v9.0.20.0202, Partek Inc., Chesterfield, MO, USA), using default settings.

Control:

Article Title: Molecular monitoring of short- and long-term transcriptional effects of hair growth stimulating agents
Article Snippet: RNA-Seq data processing and analysis were performed using the Partek Flow analysis software (v9.0) with GRCh38 genome reference data from Ensembl (v99) [ , ]. .. Total RNA data processing comprised standard read quality control, alignment to the human genome using the STAR aligner (v2.5.3a), gene-based feature counting using the Partek Expectation-Maximization algorithm, and removal of outliers detected via principal component analysis (PCA). mRNA genes with low expression (counts per million (CPM) < 1.5 in at least 75% of samples) were removed from the analyses and the data were TMM-normalized. ..

Expressing:

Article Title: Molecular monitoring of short- and long-term transcriptional effects of hair growth stimulating agents
Article Snippet: RNA-Seq data processing and analysis were performed using the Partek Flow analysis software (v9.0) with GRCh38 genome reference data from Ensembl (v99) [ , ]. .. Total RNA data processing comprised standard read quality control, alignment to the human genome using the STAR aligner (v2.5.3a), gene-based feature counting using the Partek Expectation-Maximization algorithm, and removal of outliers detected via principal component analysis (PCA). mRNA genes with low expression (counts per million (CPM) < 1.5 in at least 75% of samples) were removed from the analyses and the data were TMM-normalized. ..



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KEY RESOURCES TABLE

Journal: Neuron

Article Title: Inhibition of Upf2-Dependent Nonsense-Mediated Decay Leads to Behavioral and Neurophysiological Abnormalities by Activating the Immune Response

doi: 10.1016/j.neuron.2019.08.027

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: STAR aligner v2.5.3a , Cold Spring Harbor Laboratories , https://github.com/alexdobin/STAR.

Techniques: Recombinant, Sequencing, SYBR Green Assay, Multiplex Assay, Microarray, Knock-Out, Software